Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | P | Q | R | S | T | U _ __call__() (seqme.Cache method) (seqme.Metric method) (seqme.metrics.AuthPct method) (seqme.metrics.ClippedCoverage method) (seqme.metrics.ClippedDensity method) (seqme.metrics.ConformityScore method) (seqme.metrics.Count method) (seqme.metrics.Diversity method) (seqme.metrics.FBD method) (seqme.metrics.FKEA method) (seqme.metrics.Fold method) (seqme.metrics.HitRate method) (seqme.metrics.Hypervolume method) (seqme.metrics.ID method) (seqme.metrics.KID method) (seqme.metrics.KLDivergence method) (seqme.metrics.Length method) (seqme.metrics.MMD method) (seqme.metrics.NGramJaccardSimilarity method) (seqme.metrics.Novelty method) (seqme.metrics.Precision method) (seqme.metrics.Recall method) (seqme.metrics.Subset method) (seqme.metrics.Threshold method) (seqme.metrics.Uniqueness method) (seqme.models.AliphaticIndex method) (seqme.models.Aromaticity method) (seqme.models.BomanIndex method) (seqme.models.Charge method) (seqme.models.Ensemble method) (seqme.models.ESM2 method) (seqme.models.ESMFold method) (seqme.models.GENALM method) (seqme.models.Gravy method) (seqme.models.Hydrophobicity method) (seqme.models.HydrophobicMoment method) (seqme.models.Hyformer method) (seqme.models.InstabilityIndex method) (seqme.models.IsoelectricPoint method) (seqme.models.KmerFrequencyEmbedding method) (seqme.models.LogP method) (seqme.models.PCA method) (seqme.models.ProteinWeight method) (seqme.models.QED method) (seqme.models.RNAFM method) (seqme.models.SAScore method) (seqme.models.ThirdPartyModel method) __init__() (seqme.Cache method) (seqme.Metric method) (seqme.MetricResult method) (seqme.metrics.AuthPct method) (seqme.metrics.ClippedCoverage method) (seqme.metrics.ClippedDensity method) (seqme.metrics.ConformityScore method) (seqme.metrics.Count method) (seqme.metrics.Diversity method) (seqme.metrics.FBD method) (seqme.metrics.FKEA method) (seqme.metrics.Fold method) (seqme.metrics.HitRate method) (seqme.metrics.Hypervolume method) (seqme.metrics.ID method) (seqme.metrics.KID method) (seqme.metrics.KLDivergence method) (seqme.metrics.Length method) (seqme.metrics.MMD method) (seqme.metrics.NGramJaccardSimilarity method) (seqme.metrics.Novelty method) (seqme.metrics.Precision method) (seqme.metrics.Recall method) (seqme.metrics.Subset method) (seqme.metrics.Threshold method) (seqme.metrics.Uniqueness method) (seqme.models.AliphaticIndex method) (seqme.models.Aromaticity method) (seqme.models.BomanIndex method) (seqme.models.Charge method) (seqme.models.Ensemble method) (seqme.models.ESM2 method) (seqme.models.ESMFold method) (seqme.models.ESMIF1 method) (seqme.models.GENALM method) (seqme.models.Gravy method) (seqme.models.Hydrophobicity method) (seqme.models.HydrophobicMoment method) (seqme.models.Hyformer method) (seqme.models.InstabilityIndex method) (seqme.models.IsoelectricPoint method) (seqme.models.KmerFrequencyEmbedding method) (seqme.models.LogP method) (seqme.models.PCA method) (seqme.models.ProteinWeight method) (seqme.models.QED method) (seqme.models.RNAFM method) (seqme.models.SAScore method) (seqme.models.ThirdPartyModel method) A AliphaticIndex (class in seqme.models) Aromaticity (class in seqme.models) AuthPct (class in seqme.metrics) B BomanIndex (class in seqme.models) C Cache (class in seqme) Charge (class in seqme.models) ClippedCoverage (class in seqme.metrics) ClippedDensity (class in seqme.metrics) combine() (in module seqme) ConformityScore (class in seqme.metrics) Count (class in seqme.metrics) D Diversity (class in seqme.metrics) E Ensemble (class in seqme.models) ESM2 (class in seqme.models) ESMFold (class in seqme.models) ESMIF1 (class in seqme.models) evaluate() (in module seqme) extract_non_dominated() (in module seqme) F FBD (class in seqme.metrics) FKEA (class in seqme.metrics) Fold (class in seqme.metrics) G GENALM (class in seqme.models) Gravy (class in seqme.models) H HitRate (class in seqme.metrics) Hydrophobicity (class in seqme.models) HydrophobicMoment (class in seqme.models) Hyformer (class in seqme.models) Hypervolume (class in seqme.metrics) I ID (class in seqme.metrics) InstabilityIndex (class in seqme.models) IsoelectricPoint (class in seqme.models) K KID (class in seqme.metrics) KLDivergence (class in seqme.metrics) KmerFrequencyEmbedding (class in seqme.models) knn_alignment_score() (in module seqme.utils) L Length (class in seqme.metrics) LogP (class in seqme.models) M Metric (class in seqme) MetricResult (class in seqme) MMD (class in seqme.metrics) N NGramJaccardSimilarity (class in seqme.metrics) Novelty (class in seqme.metrics) P PCA (class in seqme.models) pca() (in module seqme.utils) plot_bar() (in module seqme) plot_embeddings() (in module seqme.utils) plot_knn_alignment_score() (in module seqme.utils) plot_line() (in module seqme) plot_parallel() (in module seqme) plot_scatter() (in module seqme) Precision (class in seqme.metrics) ProteinWeight (class in seqme.models) Q QED (class in seqme.models) R rank() (in module seqme) read_fasta() (in module seqme) read_pickle() (in module seqme) Recall (class in seqme.metrics) rename() (in module seqme) RNAFM (class in seqme.models) S SAScore (class in seqme.models) show() (in module seqme) shuffle_characters() (in module seqme.utils) sort() (in module seqme) spearman_alignment_score() (in module seqme.utils) strip() (in module seqme) subsample() (in module seqme.utils) Subset (class in seqme.metrics) T ThirdPartyModel (class in seqme.models) Threshold (class in seqme.metrics) to_fasta() (in module seqme) to_latex() (in module seqme) to_pickle() (in module seqme) top_k() (in module seqme) tsne() (in module seqme.utils) U umap() (in module seqme.utils) Uniqueness (class in seqme.metrics)
